I look at cleaning the notes the same way as I look at rolling back the odometer in a car. It's highly unethical (and illegal) to roll back the odometer in a car and then sell it without disclosing, because you are misrepresenting reality.
But for your own personal use, there's no problem with cracking open the odometer and rolling it back to zero (which I have done on an old car that I restored.) Of course I kept a record of the reading before rolling it back, and fully disclosed all of this to the buyer when I sold it. Cleaning notes is the same - fine to do it, but disclose, disclose, disclose.