There is no way, absolutely no way, of determining the exact totals with the replaced notes omitted, since there were never any records kept of them, so they are reported as 10 million each; the tiny fraction of a percent replaced wouldn't make any significant difference. Of course the B of C received its ten million notes for which it paid, but these include the relatively few replacements.
Before 1954, the ten million totals are exactly correct, since any damaged note was replaced with another specially printed one with the same serial number. This procedure was too time-consuming. Since 1954, the ten million totals have been approximately correct, and certainly the best we can ever hope to do.
The Charlton figures come under the heading "quantity printed", not "quantity printed and issued", which gives a way out in case anybody wants to get too picky. Ten million were printed but the wrecks weren't issued.